The Quarry Cluster
Available Software
The following table contains all of the macros and keywords available for use with the SoftEnv system on Quarry. If you need a software package that is not listed in this table, please submit a Research Systems Software Request.In addition to the packages available via SoftEnv, there are several utilities and applications included in the Red Hat Linux Enterprise Server distribution. Your default path should be configured to allow use of the distribution software. Please contact the High Performance Systems group, hps-admin@iu.edu, if you feel there's a problem with your environment, or software that should be available in the distribution.
(A single table of all keywords is also available)
| Macro | Description |
|---|---|
| @Molpro | A system for molecular electronic structure calculations |
| @default | Standard site-specific settings |
| @intel-32-v10.0 | Intel(R) compiler suite, 32-bit |
| @intel-32-v10.1 | Intel(R) compiler suite, 32-bit |
| @intel-64-v10.0 | Intel(R) compiler suite, 64-bit |
| @intel-64-v10.1 | Intel(R) compiler suite, 64-bit |
| @lam | A MPI implementation before OpenMPI, still in use |
| @mpich1 | Default MPICH1 (compiled with Intel compilers) |
| @openmpi | Default openmpi (compiled with Intel compilers) |
| @quarry | Default environment for Quarry users |
| Keyword | Description |
|---|---|
| +CDO-64 | NetCDF aware Common Data Operators, 64-bit |
| +ITK-3.4.0 | InsightToolKit-3.4.0 |
| +Lisrel | Lisrel Structural Equation Modelling - system default version |
| +Lisrel-8.7 | Lisrel Structural Equation Modelling Version 8.7 |
| +Maple | Maple mathematical software, system default version |
| +Maple-11 | Maple mathematical software, version 11 |
| +Mathematica | Mathematica computational environment |
| +Mathematica-6.0 | Mathematica computational environment, version 6.0 |
| +Matlab | The MATLAB computational environment |
| +NetCDF-64 | Network Common Data Form for array oriented data, 64-bit |
| +OpenCV-1.0.0 | OpenCV-1.0.0 |
| +Oracle | Oracle client, system default version |
| +Pblast | Parallel NCBI Blast |
| +Pphast | Parallel Phast, (reqs. +openmpi-1.2.5-intel-32) |
| +R | The R Project for Statistical Computing |
| +R-2.5.1 | A free software environment for statistical computing |
| +R-2.6.0 | A free software environment for statistical computing |
| +Splus | The S-Plus statistical analysis system, system default version |
| +Splus-8.0.4 | The S-Plus statistical analysis system |
| +StarP | StarP, system default version |
| +StarP-2.6.0 | StarP, version 2.6.0 |
| +StarP-2.6.1 | StarP, version 2.6.1 |
| +StatTransfer | Stat/Transfer, system default version |
| +StatTransfer9 | Stat/Transfer, version 9 |
| +Timbl | Tilberg Memory Based Learner GCC-4.1.1 |
| +VTK-5.0.3-64 | VTK 5.0.3, 64-bit |
| +VampirTrace-gcc-32 | Vampir Tracing v.5.4.4 32-bit gcc compilers |
| +VampirTrace-gcc-64 | Vampir Tracing v.5.4.4 64-bit gcc compilers |
| +VampirTrace-intel-32 | Vampir Tracing v.5.4.4 32-bit intel compilers |
| +VampirTrace-intel-64 | Vampir Tracing v.5.4.4 64-bit intel compilers |
| +WGRIB-64 | Manipulate, inventory and decode GRIB files |
| +ansys | Ansys, Inc. Solutions, latest stable version |
| +ansys.v110 | Ansys, Inc. Solutions, version 11.0 |
| +autodoc-4 | Autodoc-4 suite, Intel compilers, 64-bit |
| +binutils | binary utilities |
| +binutils-2.18 | binary utilities 2.18 |
| +blat | BLAT |
| +blat-34 | BLAT-34 |
| +cern | cernlib binaries and libraries |
| +cmake-32 | CMake: Cross-platform 'make' 32-bit |
| +cmake-64 | CMake: Cross-platform 'make' 64-bit |
| +curl-7.18 | A command line tool for transferring files with URL syntax |
| +ds9 | DS9 image display |
| +emacs | The GNU Emacs text editor, system default version |
| +emacs-22.1 | The GNU Emacs text editor, version 22.1 |
| +fftw-3.1.2 | Fast Fourier Transforms |
| +fluent | Fluent, latest stable version |
| +fluent64-6.3.26 | Fluent, version 6.3.26 |
| +ga-4.0.8-openmpi-1.2.4 | Global Array with Openmpi-1.2.4 |
| +gambit | Gambit, latest stable version |
| +gambit64-2.4.6 | Gambit, version 2.4.6 |
| +gamess | general ab initio quantum chemistry package |
| +garli | Garli |
| +garli0.942 | Garli0.942 |
| +garli0.951 | Garli0.951 |
| +gcc-4.1.1 | GNU compiler suite, version 4.1.1 |
| +gcc-4.2.2 | GNU compiler suite, version 4.2.2 |
| +genomethreader-1.0.4-32bit | GenomeThreader gth-1.0.4-Linux_x86-64-32bit |
| +genomethreader32 | GenomeThreader 32 bit |
| +gnuplot | Portable data and function plotting utility, system default version |
| +gnuplot-4.2.2 | Portable data and function plotting utility 4.2.2 |
| +graphviz-2.12 | Graphviz software for representing structural information as graphs |
| +gsl-1.10 | GNU Scientific Library, version 1.10 |
| +hadoop | HADOOP; system default currently 0.17.0 |
| +hadoop-0.17.0 | HADOOP 0.17.0 |
| +hpss | Applications to access HPSS. |
| +intel-cmkl-10.0.2.018 | Intel Math kernel Library 10.0.2.018 |
| +intel-mkl | Intel Cluster Math kernel Library, system default version |
| +iraf | Image Reduction and Analysis Facility |
| +local-utils | Local Quarry utilities |
| +log4j | The Log4j Java runtime logging system, system default version: |
| +log4j-1.2.15 | The Log4j Java runtime logging system, system default version: |
| +ls-dyna.971.dp | LS-DYNA Double Precision, Version 971 |
| +ls-dyna.971.sp | LS-DYNA Single Precision, Version 971 |
| +ls-dyna.dp | LS-DYNA Double Precision |
| +ls-dyna.sp | LS-DYNA Single Precision |
| +lynx | text-based web browser, system default version |
| +lynx-2.8.6 | text-based web browser, version 2.8.6 |
| +migrate | Migrate; default; serial; icc |
| +migrate-2.3-p-mpi | Migrate 2.3; Open MPI; icc |
| +migrate-2.3-p-mpi-smp | Migrate 2.3; Open MPI-SMP; icc |
| +migrate-2.3-p-serial-gcc | Migrate 2.3; serial; gcc |
| +migrate-2.3-p-serial-icc | Migrate 2.3; serial; icc |
| +migrate-2.3-p-smp | Migrate 2.3; SMP; icc |
| +moab | Moab Workload Manager, system default version |
| +moab-5.1.0-p6 | Moab Workload Manager 5.1.0 patch level 6 |
| +moab-5.2.3.s10813 | Moab Workload Manager 5.2.3 |
| +nano | pico substitute, system default version |
| +nano-1.2.5 | pico substitute |
| +openafs | OpenAFS file system |
| +openmpi-1.2.6-gcc-32 | Openmpi-1.2.6 GCC compilers 32-bit |
| +openmpi-1.2.6-gcc-64 | Openmpi-1.2.6 GCC compilers 64-bit |
| +openmpi-1.2.6-intel-32 | Openmpi-1.2.6 Intel compilers 32-bit |
| +openmpi-1.2.6-intel-64 | Openmpi-1.2.6 Intel compilers 64-bit |
| +oracle_10g_rel2 | Oracle client, version 10g, release 2 |
| +pari | for fast computations in number theory |
| +pgi | Portland Group Compilers 7.0-3 |
| +pgi-6.1-6 | Portland Group compilers 6.1-6 |
| +pgi-7.0-3 | Portland Group compilers 7.0-3 |
| +pvm3 | pvm3.4.5 gcc 64-bit compiled |
| +python | The python interpreter, lastest stable version |
| +python-2.5.1 | The python interpreter, version 2.5.1 |
| +python32 | The python interpreter, 32-bit i386 version |
| +python32-2.3.4 | The python interpreter, 32-bit i386 version 2.3.4 |
| +qt4 | Qt4 default version |
| +qt4-4.3.2 | Qt4 |
| +rats | RATS Econometric software package |
| +rats7 | RATS econometric software package |
| +ray | analysis and visualization of lighting in design |
| +rfs | Research File System. |
| +sas | The SAS system for data analysis |
| +sas913 | SAS version 9.1.3 |
| +scheme | Chez Scheme, default system version |
| +scheme-7.3 | Chez Scheme, version 7.3 |
| +softenv | Software Environment Management System |
| +softenv-1.6.2 | SoftEnv 1.6.2 |
| +sqlite-3.5.6 | SQLite an embedded SQL database engine |
| +starcd | StarCD, latest stable version |
| +starcd_4.02.001 | CD Adapco StarCD, version 4.02.001 |
| +stata | A statistical package for data analysis, management, graphics |
| +stata-mp | A statistical package for data analysis, management, graphics |
| +stata10 | Stata version 10 |
| +structure | Structure |
| +structure-2.2 | Structure 2.2 |
| +svn | Subversion version control system |
| +swig | Simplified Wrapper and Interface Generator, system default version |
| +swig-1.3.31 | Simplified Wrapper and Interface Generator, 1.3.31 |
| +tcl-tk | Tcl 8.4.16, Tk 8.4.16 |
| +teTeX | the teTeX distribution of TeX/LaTeX, version 3.0 |
| +teTeX-3.0 | the teTeX distribution of TeX/LaTeX, version 3.0 |
| +totalview | TotalView Parallel Debugger. system default version |
| +totalview-8.3.0-1 | TotalView 8.3.0-1 Parallel Debugger |
| +trilinos | multi-physics engineering and scientific tools |
| +twisted | The Twisted Python server framework: system default version |
| +twisted-8.0.1 | The Twisted Python server framework: version 8.0.1 |
| +user | Default user owned paths |
| +user-paths | Standard user-owned paths |
| +valgrind | Valgrind Debugger, System default version |
| +valgrind-3.3.1 | Valgrind Debugger, v3.3.1 |
| +xemacs | XEmacs text editor, system default version |
| +xemacs-21.4.20 | XEmacs 21.4.20 Double Solitaire release |
| +xerces-c++ | The Xerces C++ XML parser, system default version |
| +xerces-c++-2.8.0 | The Xerces C++ XML parser, version 2.8.0 |
| +intel-cc-10.1.013 | Intel(R) C/C++ Compiler for Linux 32-bit, version 10.1.013 |
| +intel-cce-10.1.013 | Intel(R) C/C++ Compiler for Linux 64-bit, version 10.1.013 |
| +intel-fc-10.1.013 | Intel(R) Fortran Compiler for Linux 32-bit, version 10.1.013 |
| +intel-fce-10.1.013 | Intel(R) C/C++ Compiler for Linux 64-bit, version 10.1.013 |
| +intel-idb-10.1.013 | Intel(R) Debugger (IDB) for Linux. 32-bit, version 10.1.013 |
| +intel-idbe-10.1.013 | Intel(R) Debugger (IDB) for Linux. 64-bit, version 10.1.013 |
| +openmpi-1.2.5-gcc-32 | Openmpi-1.2.5 GCC compilers 32-bit |
| +openmpi-1.2.5-gcc-64 | Openmpi-1.2.5 GCC compilers 64-bit |
| +openmpi-1.2.5-intel-32 | Openmpi-1.2.5 Intel compilers 32-bit |
