KEGG PATHWAY
- KEGG PATHWAY comes from the Bioinformatics Center Institute for Chemical Research at Kyoto University and is described thusly:
- KEGG is a suite of databases and associated software, integrating our current knowledge on molecular interaction networks in biological processes (PATHWAY database), the information about the universe of genes and proteins (GENES/SSDB/KO databases), and the information about the universe of chemical compounds and reactions (COMPOUND/REACTION databases).
- [online; accessed 2/13/03; http://www.genome.ad.jp/kegg/kegg1.html
CLSD implements a schema for a subsection of the PATHWAY dataset comprising the coordinates used to place genes on pathway maps.Schema
PATHWAY tables are found under the 'kegg' schema.
Table Field Type Description Organism ORGANISM_ID bigint ABBREVIATION VARCHAR(3) Two or three letter abbreviation for the organism Map MAP_ID bigint ORGANISM_ID bigint NAME VARCHAR(10) Gene GENE_ID bigint ORGANISM_ID bigint NAME VARCHAR(20) DESCRIPTION VARCHAR(999) Includes NAME as well as other names and references to other databases. MapGene MAPGENE_ID bigint MAP_ID bigint GENE_ID bigint X1 bigint X2 bigint Y1 bigint Y2 bigint Diagram of the PATHWAY schema
